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Class: Association

A claim linking a subject to an object, with the context and evidence needed to interpret it.

* __NOTE__: this is an abstract class and should not be instantiated directly URI: [micokg:Association](https://w3id.org/micokg/Association) 
 classDiagram
    class Association
    click Association href "../Association/"
      NamedThing <|-- Association
        click NamedThing href "../NamedThing/"


      Association <|-- TaxonDiseaseAssociation
        click TaxonDiseaseAssociation href "../TaxonDiseaseAssociation/"
      Association <|-- TaxonHabitatAssociation
        click TaxonHabitatAssociation href "../TaxonHabitatAssociation/"
      Association <|-- TaxonHostAssociation
        click TaxonHostAssociation href "../TaxonHostAssociation/"
      Association <|-- TaxonMetaboliteAssociation
        click TaxonMetaboliteAssociation href "../TaxonMetaboliteAssociation/"
      Association <|-- DietTaxonAssociation
        click DietTaxonAssociation href "../DietTaxonAssociation/"
      Association <|-- DietMetaboliteAssociation
        click DietMetaboliteAssociation href "../DietMetaboliteAssociation/"
      Association <|-- MetaboliteDiseaseAssociation
        click MetaboliteDiseaseAssociation href "../MetaboliteDiseaseAssociation/"


      Association : anatomical_context

      Association : confidence

      Association : derived_from





        Association --> "*" Observation : derived_from
        click Observation href "../Observation/"



      Association : description

      Association : direction





        Association --> "0..1" DirectionEnum : direction
        click DirectionEnum href "../DirectionEnum/"



      Association : effect_size

      Association : environmental_context

      Association : has_evidence

      Association : host_context

      Association : id

      Association : name

      Association : negated

      Association : object

      Association : p_value

      Association : predicate

      Association : source_study





        Association --> "1" Study : source_study
        click Study href "../Study/"



      Association : subject
## Inheritance * [NamedThing](NamedThing.md) * **Association** * [TaxonDiseaseAssociation](TaxonDiseaseAssociation.md) * [TaxonHabitatAssociation](TaxonHabitatAssociation.md) * [TaxonHostAssociation](TaxonHostAssociation.md) * [TaxonMetaboliteAssociation](TaxonMetaboliteAssociation.md) * [DietTaxonAssociation](DietTaxonAssociation.md) * [DietMetaboliteAssociation](DietMetaboliteAssociation.md) * [MetaboliteDiseaseAssociation](MetaboliteDiseaseAssociation.md) ## Class Properties | Property | Value | | --- | --- | | Class URI | [micokg:Association](https://w3id.org/micokg/Association) | ## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [subject](subject.md) | 1
[Uriorcurie](Uriorcurie.md) | The entity the claim is about (its identifier) | direct | | [predicate](predicate.md) | 1
[Uriorcurie](Uriorcurie.md) | Relation from RO | direct | | [object](object.md) | 1
[Uriorcurie](Uriorcurie.md) | The entity the subject is linked to (its identifier) | direct | | [direction](direction.md) | 0..1
[DirectionEnum](DirectionEnum.md) | Whether the subject is increased, decreased, present or absent in the compare... | direct | | [effect_size](effect_size.md) | 0..1
[Float](Float.md) | Effect size as reported by the source, e | direct | | [p_value](p_value.md) | 0..1
[Float](Float.md) | P-value as reported by the source | direct | | [anatomical_context](anatomical_context.md) | 0..1
[Uriorcurie](Uriorcurie.md) | Body site the claim applies to (UBERON) | direct | | [environmental_context](environmental_context.md) | 0..1
[Uriorcurie](Uriorcurie.md) | Environment the claim applies to (ENVO) | direct | | [host_context](host_context.md) | 0..1
[Uriorcurie](Uriorcurie.md) | Host taxon the claim applies to, e | direct | | [has_evidence](has_evidence.md) | *
[Uriorcurie](Uriorcurie.md) | Type of evidence behind the claim (ECO terms) | direct | | [source_study](source_study.md) | 1
[Study](Study.md) | The study or resource the claim comes from | direct | | [derived_from](derived_from.md) | *
[Observation](Observation.md) | Observations the claim was derived from, if any | direct | | [confidence](confidence.md) | 0..1
[Float](Float.md) | Confidence between 0 and 1 | direct | | [negated](negated.md) | 0..1
[Boolean](Boolean.md) | True when the source reports that the association was looked for and not foun... | direct | | [id](id.md) | 1
[Uriorcurie](Uriorcurie.md) | CURIE or IRI | [NamedThing](NamedThing.md) | | [name](name.md) | 0..1
[String](String.md) | Human-readable label | [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[String](String.md) | Free-text description | [NamedThing](NamedThing.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/micokg ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | micokg:Association | | native | micokg:Association | | exact | biolink:Association | | close | sio:SIO_000897, rdf:Statement | ## LinkML Source ### Direct 
name: Association
description: A claim linking a subject to an object, with the context and evidence
  needed to interpret it.
from_schema: https://w3id.org/micokg
exact_mappings:
- biolink:Association
close_mappings:
- sio:SIO_000897
- rdf:Statement
is_a: NamedThing
abstract: true
slots:
- subject
- predicate
- object
- direction
- effect_size
- p_value
- anatomical_context
- environmental_context
- host_context
- has_evidence
- source_study
- derived_from
- confidence
- negated
class_uri: micokg:Association
### Induced 
name: Association
description: A claim linking a subject to an object, with the context and evidence
  needed to interpret it.
from_schema: https://w3id.org/micokg
exact_mappings:
- biolink:Association
close_mappings:
- sio:SIO_000897
- rdf:Statement
is_a: NamedThing
abstract: true
attributes:
  subject:
    name: subject
    description: The entity the claim is about (its identifier).
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: rdf:subject
    owner: Association
    domain_of:
    - Association
    range: uriorcurie
    required: true
  predicate:
    name: predicate
    description: 'Relation from RO. Allowed: RO:0002610 correlated with, RO:0003302
      causes or contributes to condition, RO:0002234 has output, RO:0002233 has input,
      RO:0002303 has habitat, RO:0002454 has host, RO:0002437 biotically interacts
      with.'
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: rdf:predicate
    owner: Association
    domain_of:
    - Association
    range: uriorcurie
    required: true
  object:
    name: object
    description: The entity the subject is linked to (its identifier).
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: rdf:object
    owner: Association
    domain_of:
    - Association
    range: uriorcurie
    required: true
  direction:
    name: direction
    description: Whether the subject is increased, decreased, present or absent in
      the compared condition.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:direction
    owner: Association
    domain_of:
    - Association
    range: DirectionEnum
  effect_size:
    name: effect_size
    description: Effect size as reported by the source, e.g. log2 fold change.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:effect_size
    owner: Association
    domain_of:
    - Association
    range: float
  p_value:
    name: p_value
    description: P-value as reported by the source.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:p_value
    owner: Association
    domain_of:
    - Association
    range: float
    minimum_value: 0
    maximum_value: 1
  anatomical_context:
    name: anatomical_context
    description: Body site the claim applies to (UBERON).
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:anatomical_context
    owner: Association
    domain_of:
    - Association
    range: uriorcurie
    pattern: ^UBERON:\d{7}$
  environmental_context:
    name: environmental_context
    description: Environment the claim applies to (ENVO).
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:environmental_context
    owner: Association
    domain_of:
    - Association
    range: uriorcurie
    pattern: ^ENVO:\d{8}$
  host_context:
    name: host_context
    description: Host taxon the claim applies to, e.g. NCBITaxon:9606 human.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:host_context
    owner: Association
    domain_of:
    - Association
    range: uriorcurie
    pattern: ^NCBITaxon:\d+$
  has_evidence:
    name: has_evidence
    description: Type of evidence behind the claim (ECO terms).
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:has_evidence
    owner: Association
    domain_of:
    - Association
    range: uriorcurie
    bindings:
    - range: EvidenceEnum
      obligation_level: RECOMMENDED
    multivalued: true
    pattern: ^ECO:\d{7}$
  source_study:
    name: source_study
    description: The study or resource the claim comes from.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: dct:source
    owner: Association
    domain_of:
    - Association
    range: Study
    required: true
  derived_from:
    name: derived_from
    description: Observations the claim was derived from, if any.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: prov:wasDerivedFrom
    owner: Association
    domain_of:
    - Association
    range: Observation
    multivalued: true
  confidence:
    name: confidence
    description: Confidence between 0 and 1. How it is calibrated is an open question.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:confidence
    owner: Association
    domain_of:
    - Association
    range: float
    minimum_value: 0
    maximum_value: 1
  negated:
    name: negated
    description: True when the source reports that the association was looked for
      and not found.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:negated
    owner: Association
    domain_of:
    - Association
    range: boolean
  id:
    name: id
    description: CURIE or IRI. Reuse ontology IDs; mint micokg:<type>/<local-id> for
      instances.
    from_schema: https://w3id.org/micokg
    rank: 1000
    identifier: true
    owner: Association
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    description: Human-readable label.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: rdfs:label
    owner: Association
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: Free-text description.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: dct:description
    owner: Association
    domain_of:
    - NamedThing
    range: string
class_uri: micokg:Association