| accession |
INSDC/ENA/MGnify accession |
| age_years |
Age of the host in years at sampling |
| amr_determinants |
Antimicrobial resistance determinant records |
| anatomical_context |
Body site the claim applies to (UBERON) |
| aro_class |
The ARO gene family or determinant class |
| collection_date |
Date the sample was collected |
| compartment |
One Health compartment the sample comes from |
| confers_resistance_to |
Drug or drug class (ARO drug class or CHEBI antimicrobial agent) |
| confidence |
Confidence between 0 and 1 |
| creator |
ORCID identifiers |
| derived_from |
Observations the claim was derived from, if any |
| description |
Free-text description |
| diet_metabolite_associations |
Diet or food to metabolite level claims |
| diet_taxon_associations |
Diet or food to taxon abundance claims |
| direction |
Whether the subject is increased, decreased, present or absent in the compare... |
| diseases |
Disease records, only needed to add labels |
| effect_size |
Effect size as reported by the source, e |
| env_broad_scale |
MIxS broad-scale environmental context, an ENVO biome |
| env_local_scale |
MIxS local-scale environmental context, an ENVO environmental system |
| env_medium |
MIxS environmental medium |
| environmental_context |
Environment the claim applies to (ENVO) |
| food_component |
Chemical components of the food relevant to the claim, as ChEBI terms |
| foods |
Food or dietary intervention records |
| gene_family |
KEGG orthology, EC number or Pfam family |
| gene_symbol |
Gene symbol or name as given by the source, e |
| genes |
Functional gene records |
| genomic_context |
e |
| geo_loc_name |
Free-text location as in MIxS, e |
| geo_location |
Resolvable place identifier (GAZ, GeoNames) used for joins across samples |
| has_disease |
Diseases diagnosed in the host |
| has_evidence |
Type of evidence behind the claim (ECO terms) |
| has_feature_of_interest |
The sample the observation was made on |
| has_function |
Gene Ontology terms for the gene's molecular function or biological process |
| has_host |
The host organism or participant the sample was taken from |
| has_role |
ChEBI roles of the metabolite, e |
| host_body_site |
Body site the sample was taken from, as a UBERON term |
| host_context |
Host taxon the claim applies to, e |
| hosts |
Individual host organisms or participants |
| id |
CURIE or IRI |
| in_taxon |
The taxon this host or gene belongs to |
| is_about |
What was measured - a taxon, a gene record (micokg:gene/ |
| issued |
Publication or release date |
| knowledge_source |
Resource the record was ingested from, as an infores CURIE (e |
| latitude |
Decimal degrees |
| license |
Licence URL of the source data |
| longitude |
Decimal degrees |
| metabolite_disease_associations |
Metabolite to disease claims |
| metabolites |
Metabolite records, only needed to add labels or roles |
| name |
Human-readable label |
| negated |
True when the source reports that the association was looked for and not foun... |
| object |
The entity the subject is linked to (its identifier) |
| observations |
Per-sample measurements (SOSA observations) |
| observed_property |
e |
| p_value |
P-value as reported by the source |
| part_of_study |
The study the sample belongs to |
| predicate |
Relation from RO |
| references |
Publications (doi:, PMID:) describing the study |
| resistance_mechanism |
ARO resistance mechanism, e |
| result_time |
Date the result was produced |
| samples |
Physical samples (environmental, host-associated, food) |
| sex |
Biological sex as a PATO term |
| simple_result |
The measured value |
| source_study |
The study or resource the claim comes from |
| studies |
Studies or datasets the records come from |
| subject |
The entity the claim is about (its identifier) |
| taxa |
Taxon records, only needed to add labels or rank |
| taxon_disease_associations |
Taxon to disease claims |
| taxon_habitat_associations |
Taxon to habitat claims |
| taxon_host_associations |
Taxon to host organism claims |
| taxon_metabolite_associations |
Taxon produces/consumes metabolite claims |
| taxon_rank |
Taxonomic rank (TAXRANK term), e |
| title |
Title of the study or dataset |
| unit |
Unit of the result, as a QUDT or UO identifier |
| used_procedure |
Assay (OBI) or tool/workflow (bio |