Class: TaxonMetaboliteAssociation

RO:0002234 has output = produces; RO:0002233 has input = consumes.

URI: [micokg:TaxonMetaboliteAssociation](https://w3id.org/micokg/TaxonMetaboliteAssociation)

 classDiagram
    class TaxonMetaboliteAssociation
    click TaxonMetaboliteAssociation href "../TaxonMetaboliteAssociation/"
      Association <|-- TaxonMetaboliteAssociation
        click Association href "../Association/"

      TaxonMetaboliteAssociation : anatomical_context

      TaxonMetaboliteAssociation : confidence

      TaxonMetaboliteAssociation : derived_from





        TaxonMetaboliteAssociation --> "*" Observation : derived_from
        click Observation href "../Observation/"



      TaxonMetaboliteAssociation : description

      TaxonMetaboliteAssociation : direction





        TaxonMetaboliteAssociation --> "0..1" DirectionEnum : direction
        click DirectionEnum href "../DirectionEnum/"



      TaxonMetaboliteAssociation : effect_size

      TaxonMetaboliteAssociation : environmental_context

      TaxonMetaboliteAssociation : has_evidence

      TaxonMetaboliteAssociation : host_context

      TaxonMetaboliteAssociation : id

      TaxonMetaboliteAssociation : name

      TaxonMetaboliteAssociation : negated

      TaxonMetaboliteAssociation : object

      TaxonMetaboliteAssociation : p_value

      TaxonMetaboliteAssociation : predicate

      TaxonMetaboliteAssociation : source_study





        TaxonMetaboliteAssociation --> "1" Study : source_study
        click Study href "../Study/"



      TaxonMetaboliteAssociation : subject

## Inheritance * [NamedThing](NamedThing.md) * [Association](Association.md) * **TaxonMetaboliteAssociation** ## Class Properties | Property | Value | | --- | --- | | Class URI | [micokg:TaxonMetaboliteAssociation](https://w3id.org/micokg/TaxonMetaboliteAssociation) | ## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [subject](subject.md) | 1
[Uriorcurie](Uriorcurie.md) | The entity the claim is about (its identifier) | [Association](Association.md) | | [predicate](predicate.md) | 1
[Uriorcurie](Uriorcurie.md) | Relation from RO | [Association](Association.md) | | [object](object.md) | 1
[Uriorcurie](Uriorcurie.md) | The entity the subject is linked to (its identifier) | [Association](Association.md) | | [direction](direction.md) | 0..1
[DirectionEnum](DirectionEnum.md) | Whether the subject is increased, decreased, present or absent in the compare... | [Association](Association.md) | | [effect_size](effect_size.md) | 0..1
[Float](Float.md) | Effect size as reported by the source, e | [Association](Association.md) | | [p_value](p_value.md) | 0..1
[Float](Float.md) | P-value as reported by the source | [Association](Association.md) | | [anatomical_context](anatomical_context.md) | 0..1
[Uriorcurie](Uriorcurie.md) | Body site the claim applies to (UBERON) | [Association](Association.md) | | [environmental_context](environmental_context.md) | 0..1
[Uriorcurie](Uriorcurie.md) | Environment the claim applies to (ENVO) | [Association](Association.md) | | [host_context](host_context.md) | 0..1
[Uriorcurie](Uriorcurie.md) | Host taxon the claim applies to, e | [Association](Association.md) | | [has_evidence](has_evidence.md) | *
[Uriorcurie](Uriorcurie.md) | Type of evidence behind the claim (ECO terms) | [Association](Association.md) | | [source_study](source_study.md) | 1
[Study](Study.md) | The study or resource the claim comes from | [Association](Association.md) | | [derived_from](derived_from.md) | *
[Observation](Observation.md) | Observations the claim was derived from, if any | [Association](Association.md) | | [confidence](confidence.md) | 0..1
[Float](Float.md) | Confidence between 0 and 1 | [Association](Association.md) | | [negated](negated.md) | 0..1
[Boolean](Boolean.md) | True when the source reports that the association was looked for and not foun... | [Association](Association.md) | | [id](id.md) | 1
[Uriorcurie](Uriorcurie.md) | CURIE or IRI | [NamedThing](NamedThing.md) | | [name](name.md) | 0..1
[String](String.md) | Human-readable label | [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[String](String.md) | Free-text description | [NamedThing](NamedThing.md) | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [Container](Container.md) | [taxon_metabolite_associations](taxon_metabolite_associations.md) | range | [TaxonMetaboliteAssociation](TaxonMetaboliteAssociation.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/micokg ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | micokg:TaxonMetaboliteAssociation | | native | micokg:TaxonMetaboliteAssociation | ## LinkML Source ### Direct

name: TaxonMetaboliteAssociation
description: RO:0002234 has output = produces; RO:0002233 has input = consumes.
from_schema: https://w3id.org/micokg
is_a: Association
slot_usage:
  subject:
    name: subject
    pattern: ^(NCBITaxon:\d+|GTDB:.+)$
  predicate:
    name: predicate
    pattern: ^RO:(0002234|0002233|0002610)$
  object:
    name: object
    pattern: ^CHEBI:\d+$
class_uri: micokg:TaxonMetaboliteAssociation

### Induced

name: TaxonMetaboliteAssociation
description: RO:0002234 has output = produces; RO:0002233 has input = consumes.
from_schema: https://w3id.org/micokg
is_a: Association
slot_usage:
  subject:
    name: subject
    pattern: ^(NCBITaxon:\d+|GTDB:.+)$
  predicate:
    name: predicate
    pattern: ^RO:(0002234|0002233|0002610)$
  object:
    name: object
    pattern: ^CHEBI:\d+$
attributes:
  subject:
    name: subject
    description: The entity the claim is about (its identifier).
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: rdf:subject
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: uriorcurie
    required: true
    pattern: ^(NCBITaxon:\d+|GTDB:.+)$
  predicate:
    name: predicate
    description: 'Relation from RO. Allowed: RO:0002610 correlated with, RO:0003302
      causes or contributes to condition, RO:0002234 has output, RO:0002233 has input,
      RO:0002303 has habitat, RO:0002454 has host, RO:0002437 biotically interacts
      with.'
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: rdf:predicate
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: uriorcurie
    required: true
    pattern: ^RO:(0002234|0002233|0002610)$
  object:
    name: object
    description: The entity the subject is linked to (its identifier).
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: rdf:object
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: uriorcurie
    required: true
    pattern: ^CHEBI:\d+$
  direction:
    name: direction
    description: Whether the subject is increased, decreased, present or absent in
      the compared condition.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:direction
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: DirectionEnum
  effect_size:
    name: effect_size
    description: Effect size as reported by the source, e.g. log2 fold change.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:effect_size
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: float
  p_value:
    name: p_value
    description: P-value as reported by the source.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:p_value
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: float
    minimum_value: 0
    maximum_value: 1
  anatomical_context:
    name: anatomical_context
    description: Body site the claim applies to (UBERON).
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:anatomical_context
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: uriorcurie
    pattern: ^UBERON:\d{7}$
  environmental_context:
    name: environmental_context
    description: Environment the claim applies to (ENVO).
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:environmental_context
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: uriorcurie
    pattern: ^ENVO:\d{8}$
  host_context:
    name: host_context
    description: Host taxon the claim applies to, e.g. NCBITaxon:9606 human.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:host_context
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: uriorcurie
    pattern: ^NCBITaxon:\d+$
  has_evidence:
    name: has_evidence
    description: Type of evidence behind the claim (ECO terms).
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:has_evidence
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: uriorcurie
    bindings:
    - range: EvidenceEnum
      obligation_level: RECOMMENDED
    multivalued: true
    pattern: ^ECO:\d{7}$
  source_study:
    name: source_study
    description: The study or resource the claim comes from.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: dct:source
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: Study
    required: true
  derived_from:
    name: derived_from
    description: Observations the claim was derived from, if any.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: prov:wasDerivedFrom
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: Observation
    multivalued: true
  confidence:
    name: confidence
    description: Confidence between 0 and 1. How it is calibrated is an open question.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:confidence
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: float
    minimum_value: 0
    maximum_value: 1
  negated:
    name: negated
    description: True when the source reports that the association was looked for
      and not found.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:negated
    owner: TaxonMetaboliteAssociation
    domain_of:
    - Association
    range: boolean
  id:
    name: id
    description: CURIE or IRI. Reuse ontology IDs; mint micokg:<type>/<local-id> for
      instances.
    from_schema: https://w3id.org/micokg
    rank: 1000
    identifier: true
    owner: TaxonMetaboliteAssociation
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    description: Human-readable label.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: rdfs:label
    owner: TaxonMetaboliteAssociation
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: Free-text description.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: dct:description
    owner: TaxonMetaboliteAssociation
    domain_of:
    - NamedThing
    range: string
class_uri: micokg:TaxonMetaboliteAssociation