Class: Host

An individual host organism (or a de-identified participant) from which samples were taken.

URI: [micokg:Host](https://w3id.org/micokg/Host)

 classDiagram
    class Host
    click Host href "../Host/"
      NamedThing <|-- Host
        click NamedThing href "../NamedThing/"

      Host : age_years

      Host : description

      Host : has_disease

      Host : id

      Host : in_taxon

      Host : name

      Host : sex

## Inheritance * [NamedThing](NamedThing.md) * **Host** ## Class Properties | Property | Value | | --- | --- | | Class URI | [micokg:Host](https://w3id.org/micokg/Host) | ## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [in_taxon](in_taxon.md) | 1
[Uriorcurie](Uriorcurie.md) | The taxon this host or gene belongs to | direct | | [has_disease](has_disease.md) | *
[Uriorcurie](Uriorcurie.md) | Diseases diagnosed in the host | direct | | [sex](sex.md) | 0..1
[Uriorcurie](Uriorcurie.md) | Biological sex as a PATO term | direct | | [age_years](age_years.md) | 0..1
[Float](Float.md) | Age of the host in years at sampling | direct | | [id](id.md) | 1
[Uriorcurie](Uriorcurie.md) | CURIE or IRI | [NamedThing](NamedThing.md) | | [name](name.md) | 0..1
[String](String.md) | Human-readable label | [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[String](String.md) | Free-text description | [NamedThing](NamedThing.md) | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [Container](Container.md) | [hosts](hosts.md) | range | [Host](Host.md) | | [Sample](Sample.md) | [has_host](has_host.md) | range | [Host](Host.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/micokg ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | micokg:Host | | native | micokg:Host | | close | sio:SIO_010000, biolink:IndividualOrganism | ## LinkML Source ### Direct

name: Host
description: An individual host organism (or a de-identified participant) from which
  samples were taken.
from_schema: https://w3id.org/micokg
close_mappings:
- sio:SIO_010000
- biolink:IndividualOrganism
is_a: NamedThing
slots:
- in_taxon
- has_disease
- sex
- age_years
slot_usage:
  in_taxon:
    name: in_taxon
    required: true
class_uri: micokg:Host

### Induced

name: Host
description: An individual host organism (or a de-identified participant) from which
  samples were taken.
from_schema: https://w3id.org/micokg
close_mappings:
- sio:SIO_010000
- biolink:IndividualOrganism
is_a: NamedThing
slot_usage:
  in_taxon:
    name: in_taxon
    required: true
attributes:
  in_taxon:
    name: in_taxon
    description: The taxon this host or gene belongs to.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: RO:0002162
    owner: Host
    domain_of:
    - Host
    - FunctionalGene
    range: uriorcurie
    bindings:
    - range: TaxonEnum
      obligation_level: RECOMMENDED
    required: true
    pattern: ^(NCBITaxon:\d+|GTDB:.+)$
  has_disease:
    name: has_disease
    description: Diseases diagnosed in the host.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:has_disease
    owner: Host
    domain_of:
    - Host
    range: uriorcurie
    multivalued: true
    pattern: ^(MONDO|DOID|NCIT|EFO):[A-Za-z0-9_]+$
  sex:
    name: sex
    description: Biological sex as a PATO term.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:sex
    owner: Host
    domain_of:
    - Host
    range: uriorcurie
    pattern: ^PATO:\d{7}$
  age_years:
    name: age_years
    description: Age of the host in years at sampling.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: micokg:age_years
    owner: Host
    domain_of:
    - Host
    range: float
    minimum_value: 0
  id:
    name: id
    description: CURIE or IRI. Reuse ontology IDs; mint micokg:<type>/<local-id> for
      instances.
    from_schema: https://w3id.org/micokg
    rank: 1000
    identifier: true
    owner: Host
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    description: Human-readable label.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: rdfs:label
    owner: Host
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: Free-text description.
    from_schema: https://w3id.org/micokg
    rank: 1000
    slot_uri: dct:description
    owner: Host
    domain_of:
    - NamedThing
    range: string
class_uri: micokg:Host