Class: Container

A bundle of records (one YAML file). Used for toy data and for ingesting slices of existing resources. Each association type has its own list so that contributors never need a type designator.

URI: [micokg:Container](https://w3id.org/micokg/Container)

 classDiagram
    class Container
    click Container href "../Container/"
      Container : amr_determinants





        Container --> "*" AMRDeterminant : amr_determinants
        click AMRDeterminant href "../AMRDeterminant/"



      Container : diet_metabolite_associations





        Container --> "*" DietMetaboliteAssociation : diet_metabolite_associations
        click DietMetaboliteAssociation href "../DietMetaboliteAssociation/"



      Container : diet_taxon_associations





        Container --> "*" DietTaxonAssociation : diet_taxon_associations
        click DietTaxonAssociation href "../DietTaxonAssociation/"



      Container : diseases





        Container --> "*" Disease : diseases
        click Disease href "../Disease/"



      Container : foods





        Container --> "*" FoodItem : foods
        click FoodItem href "../FoodItem/"



      Container : genes





        Container --> "*" FunctionalGene : genes
        click FunctionalGene href "../FunctionalGene/"



      Container : hosts





        Container --> "*" Host : hosts
        click Host href "../Host/"



      Container : metabolite_disease_associations





        Container --> "*" MetaboliteDiseaseAssociation : metabolite_disease_associations
        click MetaboliteDiseaseAssociation href "../MetaboliteDiseaseAssociation/"



      Container : metabolites





        Container --> "*" Metabolite : metabolites
        click Metabolite href "../Metabolite/"



      Container : observations





        Container --> "*" Observation : observations
        click Observation href "../Observation/"



      Container : samples





        Container --> "*" Sample : samples
        click Sample href "../Sample/"



      Container : studies





        Container --> "*" Study : studies
        click Study href "../Study/"



      Container : taxa





        Container --> "*" Taxon : taxa
        click Taxon href "../Taxon/"



      Container : taxon_disease_associations





        Container --> "*" TaxonDiseaseAssociation : taxon_disease_associations
        click TaxonDiseaseAssociation href "../TaxonDiseaseAssociation/"



      Container : taxon_habitat_associations





        Container --> "*" TaxonHabitatAssociation : taxon_habitat_associations
        click TaxonHabitatAssociation href "../TaxonHabitatAssociation/"



      Container : taxon_host_associations





        Container --> "*" TaxonHostAssociation : taxon_host_associations
        click TaxonHostAssociation href "../TaxonHostAssociation/"



      Container : taxon_metabolite_associations





        Container --> "*" TaxonMetaboliteAssociation : taxon_metabolite_associations
        click TaxonMetaboliteAssociation href "../TaxonMetaboliteAssociation/"

## Class Properties | Property | Value | | --- | --- | | Class URI | [micokg:Container](https://w3id.org/micokg/Container) | | Tree Root | Yes | ## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [studies](studies.md) | *
[Study](Study.md) | Studies or datasets the records come from | direct | | [samples](samples.md) | *
[Sample](Sample.md) | Physical samples (environmental, host-associated, food) | direct | | [hosts](hosts.md) | *
[Host](Host.md) | Individual host organisms or participants | direct | | [observations](observations.md) | *
[Observation](Observation.md) | Per-sample measurements (SOSA observations) | direct | | [taxa](taxa.md) | *
[Taxon](Taxon.md) | Taxon records, only needed to add labels or rank | direct | | [genes](genes.md) | *
[FunctionalGene](FunctionalGene.md) | Functional gene records | direct | | [amr_determinants](amr_determinants.md) | *
[AMRDeterminant](AMRDeterminant.md) | Antimicrobial resistance determinant records | direct | | [metabolites](metabolites.md) | *
[Metabolite](Metabolite.md) | Metabolite records, only needed to add labels or roles | direct | | [diseases](diseases.md) | *
[Disease](Disease.md) | Disease records, only needed to add labels | direct | | [foods](foods.md) | *
[FoodItem](FoodItem.md) | Food or dietary intervention records | direct | | [taxon_disease_associations](taxon_disease_associations.md) | *
[TaxonDiseaseAssociation](TaxonDiseaseAssociation.md) | Taxon to disease claims | direct | | [taxon_habitat_associations](taxon_habitat_associations.md) | *
[TaxonHabitatAssociation](TaxonHabitatAssociation.md) | Taxon to habitat claims | direct | | [taxon_host_associations](taxon_host_associations.md) | *
[TaxonHostAssociation](TaxonHostAssociation.md) | Taxon to host organism claims | direct | | [taxon_metabolite_associations](taxon_metabolite_associations.md) | *
[TaxonMetaboliteAssociation](TaxonMetaboliteAssociation.md) | Taxon produces/consumes metabolite claims | direct | | [diet_taxon_associations](diet_taxon_associations.md) | *
[DietTaxonAssociation](DietTaxonAssociation.md) | Diet or food to taxon abundance claims | direct | | [diet_metabolite_associations](diet_metabolite_associations.md) | *
[DietMetaboliteAssociation](DietMetaboliteAssociation.md) | Diet or food to metabolite level claims | direct | | [metabolite_disease_associations](metabolite_disease_associations.md) | *
[MetaboliteDiseaseAssociation](MetaboliteDiseaseAssociation.md) | Metabolite to disease claims | direct | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/micokg ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | micokg:Container | | native | micokg:Container | ## LinkML Source ### Direct

name: Container
description: A bundle of records (one YAML file). Used for toy data and for ingesting
  slices of existing resources. Each association type has its own list so that contributors
  never need a type designator.
from_schema: https://w3id.org/micokg
slots:
- studies
- samples
- hosts
- observations
- taxa
- genes
- amr_determinants
- metabolites
- diseases
- foods
- taxon_disease_associations
- taxon_habitat_associations
- taxon_host_associations
- taxon_metabolite_associations
- diet_taxon_associations
- diet_metabolite_associations
- metabolite_disease_associations
class_uri: micokg:Container
tree_root: true

### Induced

name: Container
description: A bundle of records (one YAML file). Used for toy data and for ingesting
  slices of existing resources. Each association type has its own list so that contributors
  never need a type designator.
from_schema: https://w3id.org/micokg
attributes:
  studies:
    name: studies
    description: Studies or datasets the records come from.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: Study
    multivalued: true
    inlined: true
    inlined_as_list: true
  samples:
    name: samples
    description: Physical samples (environmental, host-associated, food).
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: Sample
    multivalued: true
    inlined: true
    inlined_as_list: true
  hosts:
    name: hosts
    description: Individual host organisms or participants.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: Host
    multivalued: true
    inlined: true
    inlined_as_list: true
  observations:
    name: observations
    description: Per-sample measurements (SOSA observations).
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: Observation
    multivalued: true
    inlined: true
    inlined_as_list: true
  taxa:
    name: taxa
    description: Taxon records, only needed to add labels or rank.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: Taxon
    multivalued: true
    inlined: true
    inlined_as_list: true
  genes:
    name: genes
    description: Functional gene records.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: FunctionalGene
    multivalued: true
    inlined: true
    inlined_as_list: true
  amr_determinants:
    name: amr_determinants
    description: Antimicrobial resistance determinant records.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: AMRDeterminant
    multivalued: true
    inlined: true
    inlined_as_list: true
  metabolites:
    name: metabolites
    description: Metabolite records, only needed to add labels or roles.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: Metabolite
    multivalued: true
    inlined: true
    inlined_as_list: true
  diseases:
    name: diseases
    description: Disease records, only needed to add labels.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: Disease
    multivalued: true
    inlined: true
    inlined_as_list: true
  foods:
    name: foods
    description: Food or dietary intervention records.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: FoodItem
    multivalued: true
    inlined: true
    inlined_as_list: true
  taxon_disease_associations:
    name: taxon_disease_associations
    description: Taxon to disease claims.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: TaxonDiseaseAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  taxon_habitat_associations:
    name: taxon_habitat_associations
    description: Taxon to habitat claims.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: TaxonHabitatAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  taxon_host_associations:
    name: taxon_host_associations
    description: Taxon to host organism claims.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: TaxonHostAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  taxon_metabolite_associations:
    name: taxon_metabolite_associations
    description: Taxon produces/consumes metabolite claims.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: TaxonMetaboliteAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  diet_taxon_associations:
    name: diet_taxon_associations
    description: Diet or food to taxon abundance claims.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: DietTaxonAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  diet_metabolite_associations:
    name: diet_metabolite_associations
    description: Diet or food to metabolite level claims.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: DietMetaboliteAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  metabolite_disease_associations:
    name: metabolite_disease_associations
    description: Metabolite to disease claims.
    from_schema: https://w3id.org/micokg
    rank: 1000
    owner: Container
    domain_of:
    - Container
    range: MetaboliteDiseaseAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
class_uri: micokg:Container
tree_root: true